Supplementary materials

Zsolt Gelencsér et al. (2012): "Classifying the topology of simple AHL-driven quorum sensing circuits in bacterial genomes" submitted to Sensors
The numbers indicate the number of genes or gene topologies found in the genome. Click on the symbols in the top row to sort the table by increasing or decreasing order.

UID Bacterium name Class R1 R2 R3 R4 L1 M1 M2 M3 X? NA ∑R ∑I ∑M ∑L
40659Erwinia pyrifoliae Ep1/96γ10000000001100
41297Pectobacterium wasabiae WPP163γ01000000002100
41317Halothiobacillus neapolitanus c2γ00000100001210
41819Edwardsiella tarda EIB202γ01000000001100
42519Dickeya dadantii Ech586γ01000000002100
42523Burkholderia sp. CCGE1002β00001000002101
42975Burkholderia sp. CCGE1001β00001000002101
43089Citrobacter rodentium ICC168γ01000000002100
43247Rhodomicrobium vannielii ATCC 17100α10000000001100
43327Rhodopseudomonas palustris DX-1α30000000003300
46253Burkholderia sp. CCGE1003β00001000002101
46807Pantoea ananatis LMG 20103γ01000000002100
46839Erwinia amylovora CFBP1430γ10000000001100
46943Erwinia amylovora ATCC 49946γ10000000001100
47077Sphingobium japonicum UT26Sα10000000004400
47085Shewanella violacea DSS12γ00100000001100
47317Yersinia pestis Z176003γ02000000002200
47509Rhodobacter capsulatus SB 1003α10000000003100
49871Pantoea vagans C9-1γ11000000002200
50119Acinetobacter sp. DR1γ00000100001110
50539Ralstonia solanacearum PSI07β10100000002200
50545Ralstonia solanacearum CFBP2957β00100000001100
50547Erwinia billingiae Eb661γ11000000002200
51505Gallionella capsiferriformans ES-2β00001000001101
52537Dickeya dadantii 3937γ01000000002100
55641Asticcacaulis excentricus CB 48α10000000002100
55845Pantoea sp. At-9bγ10000000005100
57593Ralstonia solanacearum GMI1000β10100000002200
57599Bradyrhizobium japonicum USDA 110α10000000003100
57601Mesorhizobium loti MAFF303099α30000000005400
57603Sinorhizobium meliloti 1021α10000000007100
57605Methylobacterium extorquens AM1α20000000004300
57621Yersinia pestis CO92γ02000000002200
57649Acidithiobacillus ferrooxidans ATCC 23270γ00000100001110
57655Rhodospirillum rubrum ATCC 11170α10000000003100
57725Burkholderia mallei ATCC 23344β10000100006210
57741Yersinia enterocolitica subsp. enterocolitica 8081γ01000000002100
57823Burkholderia xenovorans LB400β10001000003201
57863Ruegeria pomeroyi DSS-3α20000000004200
57875Yersinia pestis KIM 10γ02000000002200
57921Saccharophagus degradans 2-40γ00000000101100
57931Pseudomonas syringae pv. syringae B728aγ01000000003200
57945Pseudomonas aeruginosa PAO1γ10001000005201
57953Burkholderia cenocepacia J2315β10000100006210
57955Rhizobium leguminosarum bv. viciae 3841α10000000009300
57957Pectobacterium atrosepticum SCRI1043γ01000000002100
57967Pseudomonas syringae pv. tomato str. DC3000γ01000000003100
57977Pseudomonas aeruginosa UCBPP-PA14γ10001000005201
58001Chromobacterium violaceum ATCC 12472β01000000001101
58037Yersinia pestis biovar Microtus str. 91001γ02000000002200
58069Chelativorans sp. BNC1α10000000002100
58073Burkholderia sp. 383β00000100003110
58075Burkholderia vietnamiensis G4β00000100105310
58099Pseudomonas syringae pv. phaseolicola 1448Aγ01000000003100
58147Jannaschia sp. CCS1α10000000005100
58157Yersinia pseudotuberculosis IP 32953γ02000000002200
58163Vibrio fischeri ES114γ00100000001100
58187Paracoccus denitrificans PD1222α10000000002100
58249Agrobacterium vitis S4α200000000010400
58269Agrobacterium radiobacter K84α01000000007200
58283Pseudoalteromonas atlantica T6cγ00000000101200
58295Nitrobacter winogradskyi Nb-255α10000000001100
58351Sphingopyxis alaskensis RB2256α20000000002200
58369Burkholderia cenocepacia HI2424β00000100004110
58371Burkholderia cenocepacia AU 1054β00000100004110
58377Rhizobium etli CFN 42α100100000011400
58383Burkholderia mallei NCTC 10229β00000100106210
58385Burkholderia mallei NCTC 10247β00000100105210
58387Burkholderia mallei SAVP1β00000100002110
58429Acidovorax citrulli AAC00-1β10000000001100
58439Rhodopseudomonas palustris HaA2α20000000002200
58441Rhodopseudomonas palustris BisB5α20000000002200
58443Rhodopseudomonas palustris BisB18α11000000003300
58445Rhodopseudomonas palustris BisA53α10000000002100
58475Geobacter uraniireducens Rf4δ01000000001100
58485Yersinia pestis Angolaγ02000000002200
58487Yersinia pseudotuberculosis IP 31758γ02000000002200
58505Bradyrhizobium sp. BTAi1α10100000104400
58543Geobacter sp. FRC-32δ01000000001100
58549Sinorhizobium medicae WSM419α10000000008300
58553Sodalis glossinidius str. morsitansγ01000000002100
58597Roseobacter denitrificans OCh 114α10000000002200
58607Yersinia pestis Antiquaγ02000000002200
58609Yersinia pestis Nepal516γ02000000002200
58613Acidithiobacillus ferrooxidans ATCC 53993γ00000100001110
58617Aeromonas hydrophila subsp. hydrophila ATCC 7966γ00100000003100
58619Yersinia pestis Pestoides Fγ02000000002200
58627Pseudomonas aeruginosa PA7γ10001000003201
58631Aeromonas salmonicida subsp. salmonicida A449γ00100000002100
58697Burkholderia multivorans ATCC 17616β00000100003110
58699Burkholderia phymatum STM815β00001000001101
58707Dinoroseobacter shibae DFL 12α20000000005300
58721Shewanella woodyi ATCC 51908γ00100000001100
58725Serratia proteamaculans 568γ01000000002100
58729Burkholderia phytofirmans PsJNβ10001000003201
58731Acinetobacter baumannii ATCC 17978γ00000100001110
58765Acinetobacter baumannii ACICUγ00000100001110
58769Burkholderia cenocepacia MC0-3β10000100005210
58821Methylobacterium extorquens PA1α10000000001100
58843Methylobacterium sp. 4-46α10000000001100
58845Methylobacterium radiotolerans JCM 2831α30000000003400
58907Vibrio fischeri MJ11γ00100000001100
58909Burkholderia multivorans ATCC 17616β00000100003110
58933Methylobacterium chloromethanicum CM4α10000000001100
58937Methylobacterium populi BJ001α10000000001100
58941Bradyrhizobium sp. ORS278α10000000001100
58959Phenylobacterium zucineum HLK1α10000000002100
58991Rhizobium leguminosarum bv. trifolii WSM1325α10000000008200
58995Rhodopseudomonas palustris TIE-1α20000000002200
58997Rhizobium leguminosarum bv. trifolii WSM2304α10000000009100
59023Methylobacterium nodulans ORS 2060α20000000104300
59029Erwinia tasmaniensis Et1/99γ11000000002200
59057Beijerinckia indica subsp. indica ATCC 9039α10000000004200
59081Sinorhizobium fredii NGR234α10000000007200
59083Acinetobacter baumannii AB0057γ00000100001110
59115Rhizobium etli CIAT 652α10010000009200
59151Yersinia pseudotuberculosis YPIIIγ02000000002200
59153Yersinia pseudotuberculosis PB1/+γ02000000002200
59251Aliivibrio salmonicida LFI1238γ00100000002100
59271Acinetobacter baumannii AB307-0294γ00000100001110
59275Pseudomonas aeruginosa LESB58γ10001000005201
59289Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)γ01000000002100
59295Pectobacterium carotovorum subsp. carotovorum PC1γ01000000002100
59297Dickeya zeae Ech1591γ01000000001100
59309Desulfovibrio magneticus RS-1δ01000000001100
59397Burkholderia glumae BGR1β00000100008110
59403Edwardsiella ictaluri 93-146γ01000000001100
59433Methylocella silvestris BL2α10000000003100
59437Variovorax paradoxus S110β01000000001100
59581Ketogulonicigenium vulgare Y25α10000000001100
59969Enterobacter cloacae SCF1γ01000000002100
61587Gluconacetobacter diazotrophicus PAl 5α00000000101100
61617Methylobacterium extorquens DM4α10000000001100
61637Acinetobacter baumannii AYEγ00000100001110
62101Mesorhizobium ciceri biovar biserrulae WSM1271α20000000006300
62901Rhodopseudomonas palustris CGA009α10000000001100
57733Burkholderia pseudomallei K96243β10000101018320
58081Burkholderia thailandensis E264β10000101019320
58303Burkholderia ambifaria AMMDβ00000101016220
58389Burkholderia pseudomallei 668β10000101018320
58391Burkholderia pseudomallei 1710bβ10000101018320
58515Burkholderia pseudomallei 1106aβ10000101018320
58701Burkholderia ambifaria MC40-6β00000101015220